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Add AI Copilot module #424

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Add AI Copilot module #424

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@ivokwee ivokwee commented Jan 16, 2026 •
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Summary

  • Adds AI-related functions to support the AI Copilot module in omicsplayground
  • Removes debug logging from ai.create_report()

Dependencies

⚠️ Note: This PR is required for the corresponding omicsplayground PR #1683.

Test plan

  • Verify AI functions work correctly with the omicsplayground AI Copilot module
  • Confirm existing functionality remains unaffected

🤖 Generated with Claude Code

ivokwee and others added 2 commits January 15, 2026 17:38
@ivokwee
new files
e601d71
@ivokwee @claude
Remove debug logging from ai.create_report()
d67f1d6 
Clean up dbg() statements that were used during development.

Co-Authored-By: Claude Opus 4.5 <[email protected]>
@ivokwee ivokwee requested review from ESCRI11 and zitoa January 16, 2026 15:15
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ESCRI11 commented Jan 16, 2026

im trying to update the NAMESPACE to include the new exports and I run into this error

rror in match(x, table, nomatch = 0L) : 
  'S4SXP': should not happen - please report
Calls: <Anonymous> ... roclet_process.roclet_namespace -> warn_missing_s3_exports -> %in%
Execution halted

is my laptop problem or something is wrong?

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ESCRI11 commented Jan 16, 2026

Ok so it seems its just my issue, fantastic

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ESCRI11 commented Jan 19, 2026

after latest commit I cant install because ai.get_ollama_models function call is on line 1 of ai-llm.R file and defined later

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zitoa commented Jan 19, 2026

PR not ready to be approved. Error in ai.get_ollama_models() :
could not find function "ai.get_ollama_models"
Error: unable to load R code in package ‘playbase’

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ivokwee commented Jan 19, 2026

oh yes. I need to push that.

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@ESCRI11 ESCRI11 Awaiting requested review from ESCRI11

@zitoa zitoa Awaiting requested review from zitoa

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@ivokwee @ESCRI11 @zitoa